USC-OGP 2-DE database Two-dimensional polyacrylamide gel electrophoresis database

USC-OGP 2-DE database  Search by                Maps             Select Remote Interfaces [All Interfaces] SWISS-2DPAGE World-2DPAGE Portal World-2DPAGE Repository Exclude local DBs has only effect if a remote interface is selected

Searching in 'USC-OGP 2-DE database' for entry matching: PAXX_HUMAN USC-OGP 2-DE database:  PAXX_HUMAN PAXX_HUMAN General information about the entry View entry in simple text format Entry name PAXX_HUMAN Primary accession number Q9BUH6 integrated into USC-OGP 2-DE database on  January 17, 2017 (release 1) 2D Annotations were last modified on January 17, 2017 (version 1) General Annotations were last modified on  April 5, 2017 (version 2) Name and origin of the protein Description RecName: Full=Protein PAXX {ECO:0000305}; AltName: Full=Paralog of XRCC4 and XLF {ECO:0000303|PubMed:25574025}; AltName: Full=XRCC4-like small protein {ECO:0000303|PubMed:25941166};. Gene name Name=C9orf142 {ECO:0000312|HGNC:HGNC:27849} Synonyms=PAXX {ECO:0000303|PubMed:25574025}, XLS {ECO:0000303|PubMed:25941166} Annotated species Homo sapiens (Human) [TaxID: 9606] Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. References [1]   2D GEL CHARACTERIZATION Author 1., Author 2. Submitted (Mar-2011) to Current 2D PAGE maps for identified proteins How to interpret a protein UVEAL_MELANOMA_3-10 {UVEAL MELANOMA 3-10} Homo sapiens (Human)   map experimental info   UVEAL_MELANOMA_3-10 MAP LOCATIONS: SPOT OGP-1298: pI=5.27; Mw=23825 Cross-references UniProtKB/Swiss-Prot Q9BUH6; PAXX_HUMAN. 2D PAGE maps for identified proteins How to interpret a protein map You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw. Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly. Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed. External data extracted from UniProtKB/Swiss-Prot Extracted from UniProtKB/Swiss-Prot, release: 0.0 Entry name PAXX_HUMAN Primary accession number Q9BUH6 Secondary accession number(s) Q8IY19 Sequence was last modified on  March 1, 2004 (version 2) Annotations were last modified on  March 15, 2017 (version 113) Name and origin of the protein Description RecName: Full=Protein PAXX {ECO:0000305}; AltName: Full=Paralog of XRCC4 and XLF {ECO:0000303|PubMed:25574025}; AltName: Full=XRCC4-like small protein {ECO:0000303|PubMed:25941166}; Gene name Name=C9orf142 {ECO:0000312|HGNC:HGNC:27849} Synonyms=PAXX {ECO:0000303|PubMed:25574025}, XLS {ECO:0000303|PubMed:25941166} Encoded on Name=C9orf142 {ECO:0000312|HGNC:HGNC:27849}; Synonyms=PAXX {ECO:0000303|PubMed:25574025}, XLS {ECO:0000303|PubMed:25941166 Keywords 3D-structure; Alternative splicing; Complete proteome; DNA damage; DNA repair; Nucleus; Phosphoprotein; Reference proteome. Copyright Copyrighted by the UniProt Consortium, see http://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License Cross-references EMBL AL807752; CAI12761.1; -; Genomic_DNA EMBL BC002613; AAH02613.2; -; mRNA EMBL BC038191; AAH38191.1; -; mRNA CCDS CCDS7020.1; -. [Q9BUH6-1]; . RefSeq NP_899064.1; NM_183241.2. [Q9BUH6-1]; . UniGene Hs.409582; -; . PDB 3WTD; X-ray; 2.35 A; A/B=1-166 PDB 3WTF; X-ray; 3.45 A; A/B=1-204 PDB 4WJA; X-ray; 2.60 A; A/B=1-145 PDBsum 3WTD; -; . PDBsum 3WTF; -; . PDBsum 4WJA; -; . ProteinModelPortal Q9BUH6; -; . SMR Q9BUH6; -; . BioGrid 130343; 6; . DIP DIP-61486N; -; . IntAct Q9BUH6; 4; . iPTMnet Q9BUH6; -; . PhosphoSitePlus Q9BUH6; -; . BioMuta C9orf142; -; . DMDM 74752355; -; . EPD Q9BUH6; -; . MaxQB Q9BUH6; -; . PaxDb Q9BUH6; -; . PeptideAtlas Q9BUH6; -; . PRIDE Q9BUH6; -; . DNASU 286257; -; . Ensembl ENST00000371620; ENSP00000360682; ENSG00000148362. [Q9BUH6-1]; . GeneID 286257; -; . KEGG hsa:286257; -; . UCSC uc004cki.3; human. [Q9BUH6-1]; . CTD 286257; -; . GeneCards C9orf142; -; . H-InvDB HIX0201397; -; . HGNC HGNC:27849; C9orf142; . HPA HPA045268; -; . MIM 616315; gene; . neXtProt NX_Q9BUH6; -; . OpenTargets ENSG00000148362; -; . PharmGKB PA143485344; -; . eggNOG ENOG410IY9E; Eukaryota; . eggNOG ENOG410Y7F5; LUCA; . GeneTree ENSGT00390000000543; -; . HOGENOM HOG000294194; -; . HOVERGEN HBG101209; -; . InParanoid Q9BUH6; -; . OMA LWSTCFT; -; . OrthoDB EOG091G14JY; -; . PhylomeDB Q9BUH6; -; . TreeFam TF337247; -; . GenomeRNAi 286257; -; . PRO PR:Q9BUH6; -; . Proteomes UP000005640; Chromosome 9; . Bgee ENSG00000148362; -; . CleanEx HS_C9orf142; -; . Genevisible Q9BUH6; HS; . GO GO:0070062; C:extracellular exosome; IDA:UniProtKB; . GO GO:0070419; C:nonhomologous end joining complex; IDA:UniProtKB; . GO GO:0005634; C:nucleus; IDA:UniProtKB; . GO GO:0035861; C:site of double-strand break; IDA:UniProtKB; . GO GO:0032947; F:protein complex scaffold; IDA:UniProtKB; . GO GO:0042803; F:protein homodimerization activity; IDA:UniProtKB; . GO GO:0006974; P:cellular response to DNA damage stimulus; IDA:UniProtKB; . GO GO:0051103; P:DNA ligation involved in DNA repair; IMP:UniProtKB; . GO GO:0006303; P:double-strand break repair via nonhomologous end joining; IMP:UniProtKB; . InterPro IPR027873; PAXX; . Pfam PF15384; PAXX; 1; .

Gateways to other related servers

• The World-2DPAGE Constellation - Entry point to the world-wide 2-DPAGE resources.
• World-2DPAGE Repository - A public repository for gel-based proteomics data linked to protein identification published in the literature.
• World-2DPAGE Portal - A dynamic portal to query simultaneously world-wide gel-based proteomics databases.
• SWISS-2DPAGE - The Geneva Two-dimensional polyacrylamide gel electrophoresis database.
• ExPASy - The resources web server of the Swiss Institute of Bioinformatics

[Home]